These New York Bagel Shops Offering Pumpkin And Apple Fall Flavors

Fall in New York carries its own kind of magic, and for me, it always begins inside the city’s legendary bagel shops.

As the air turns crisp and the leaves start to change, those familiar bakeries fill with the irresistible aromas of pumpkin spice, apple cinnamon, and maple glaze. It’s more than just breakfast—it’s a seasonal ritual that makes even the chilliest morning feel comforting.

Over the years, I’ve wandered from borough to borough in search of the ultimate fall-inspired bagel, the one that strikes the perfect balance of chewy texture and warm autumn flavor. These spots get it just right.

1. Tompkins Square Bagels: Pumpkin Paradise

Last October, I stumbled into Tompkins Square Bagels after a brisk morning walk through the East Village. Their pumpkin bagels literally stopped me in my tracks! These massive, hand-rolled beauties have a subtle sweetness that doesn’t overwhelm the traditional bagel chewiness we all crave.

The magic happens when you pair it with their house-made pumpkin cream cheese – a combination that had me coming back three times in one week. The friendly staff remembered my order by my second visit!

What sets them apart is how they maintain that perfect texture: crisp exterior giving way to a soft, flavorful center. Their seasonal creations draw lines around the block, but trust me – the wait is absolutely worth it.

2. New Yorker Bagels: Apple Cinnamon Magic

Nothing beats the moment when New Yorker Bagels unveils their seasonal Apple Cinnamon Raisin bagel. Family-owned since 1981, this Queens institution knows exactly how to balance the tartness of apple with warm cinnamon notes.

My morning ritual now includes grabbing one of these gems topped with honey walnut cream cheese. The combination creates this perfect fall symphony – sweet, spiced, and incredibly satisfying.

While many places source their bagels from New Yorker’s wholesale operation, visiting their retail location offers the freshest experience. Their production never stops, ensuring that no matter when you visit, you’re getting bagels at their absolute peak perfection – something this bagel enthusiast deeply appreciates.

3. Jeff’s Bagel Run: Dessert For Breakfast

“You haven’t lived until you’ve tried the Pumpkin Pie bagel from Jeff’s,” my neighbor insisted one crisp Saturday morning. Skeptical but curious, I tracked down this Brooklyn pop-up sensation and joined the line of devoted fans.

The first bite left me speechless – graham cracker crumbs crunching against the soft, pumpkin-infused dough created this incredible contrast of textures. It’s essentially dessert disguised as breakfast, and I’m completely fine with that moral dilemma!

Jeff’s small-batch approach means each bagel receives individual attention. The limited availability makes scoring one feel like winning a delicious lottery. Follow their Instagram for pop-up locations – they sell out within hours, as I learned the hard way twice!

4. Black Seed Bagels: Harvest Apple Bliss

Black Seed’s seasonal Harvest Apple bagel changed my entire perspective on what a bagel could be. Their unique wood-fired baking method creates this incredible smoky undertone that perfectly complements the sweet apple chunks and cinnamon swirls.

My personal hack? Ask for their maple butter spread instead of regular cream cheese. The combination creates this incredible maple-apple pie experience that somehow still feels appropriate at 8am.

What I appreciate most about Black Seed is their commitment to quality ingredients. The apples are sourced from New York state farms, supporting local agriculture while ensuring peak flavor. Their multiple locations throughout Manhattan and Brooklyn make satisfying your fall bagel cravings dangerously convenient!

5. Ess-a-Bagel: Pumpkin Spice Revolution

“You’re not a true New Yorker until you’ve had Ess-a-Bagel’s pumpkin spice creation,” my cab driver announced when I mentioned my seasonal bagel quest. This iconic shop has been perfecting their craft since 1976, and their fall offerings prove why they’ve survived every food trend.

Their pumpkin spice bagel hits differently – less sweet than competitors, with complex notes of nutmeg, clove, and cinnamon that let the quality of their dough shine through. The shop’s bustling energy matches the enthusiasm for these seasonal treats.

Pro tip from a regular: arrive early on weekends! I once showed up at 11am and watched the last pumpkin bagel get snatched before my eyes. The heartbreak was real, friends – don’t let it happen to you!